Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
AR

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
LNCaP cells
cell type
androgen-dependent prostate cancer cells
chip antibody
AR (active motif)
treatment
Cells were cultured in charcoal-stripped serum medium for 2 days
genotype/variation
TRAF4-overexpression

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were fixed in 1% formaldehyde before harvesting. Cell pellets were sent to Active Motif for extraction. The library was constructed in Active Motif.

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
25335273
Reads aligned (%)
95.6
Duplicates removed (%)
55.5
Number of peaks
5420 (qval < 1E-05)

hg19

Number of total reads
25335273
Reads aligned (%)
94.9
Duplicates removed (%)
57.0
Number of peaks
5360 (qval < 1E-05)

Base call quality data from DBCLS SRA